If you have the ability to cast a spell without a spell slot can you cast that spell using a spell slot?

Question

A 10th level Drow warlock (for instance) has the following racial ability in addition to it's warlock spellcasting abilities:

Drow Magic (PHB p.24)

You know the dancing lights cantrip. When you reach 3rd level, you can cast the faerie fire spell once per day. When you reach 5th level, you can also cast the darkness spell once per day. Charisma is your spellcasting ability for these spells.

Can the Drow warlock cast faerie fire (not on the warlock spell list) using a warlock spell slot?

Can it cast darkness (on the warlock spell list) using a warlock spell slot?

The Sage Advice Compendium says this about the Magic Initiate feat:

If you’re a spellcaster, can you pick your own class when you gain the Magic Initiate feat? Yes, the feat doesn’t say you can’t. For example, if you’re a wizard and gain the Magic Initiate feat, you can choose wizard and thereby learn two more wizard cantrips and another 1st-level wizard spell.

If you have spell slots, can you use them to cast the 1st level spell you learn with the Magic Initiate feat? Yes, but only if the class you pick for the feat is one of your classes. For example, if you pick sorcerer and you are a sorcerer, the Spellcasting feature for that class tells you that you can use your spell slots to cast the sorcerer spells you know, so you can use your spell slots to cast the 1st-level sorcerer spell you learn from Magic Initiate. Similarly, if you are a wizard and pick that class for the feat, you learn a 1st-level wizard spell, which you could add to your spellbook and subsequently prepare.

But this specifically requires you to pick the feat for one of your classes to be able to cast the spell learnt using your class spell slots and does not seem directly applicable.

A Warlock can cast spells using warlock pact magic spell slots learnt from levels of another spell casting class:

Pact Magic (PHB p.164)

If you have both the Spellcasting class feature and the Pact Magic class feature from the warlock class, you can use the spell slots you gain from the Pact Magic feature to cast spells you know or have prepared from classes with the Spellcasting class feature, and you can use the spell slots you gain from the Spellcasting class feature to cast warlock spells you know.

Similarly if the warlock has leant the invocation:

Mask of Many Faces (PHB p.112)

You can cast disguise self at will, without expending a spell slot.

Can the warlock cast disguise self using a spell slot, say to decrease the chance it can be dispelled?

Answer 1

No.

Spells you can cast because of your race aren't spells you know, and thus can't be spells you prepare. Per the PHB (p. 201, "Known and Prepared Spells"):

Before a spellcaster can use a spell, he or she must have the spell firmly fixed in mind ...

... and it goes on to describe some of the class-specific variations of knowing and preparing spells. But in any case, having a feature from your race or class that allows you to cast a spell isn't the same as knowing the spell.

This is spelled out clearly in the multiclassing rules for Pact Magic quoted in the question (PHB p. 164, emphasis mine).

If you have both the Spellcasting class feature and the Pact Magic class feature from the warlock class, you can use the spell slots you gain from the Pact Magic feature to cast spells you know or have prepared from classes with the Spellcasting class feature, and you can use the spell slots you gain from the Spellcasting class feature to cast warlock spells you know.

Likewise, the Drow Magic feature clearly distinguishes the known cantrip from the merely castable other spells (PHB, p.24, emphasis mine):

You know the dancing lights cantrip. When you reach 3rd level, you can cast the faerie fire spell once per day. When you reach 5th level, you can also cast the darkness spell once per day. Charisma is your spellcasting ability for these spells.

If the intent of the rules was that Drow also knew the non-cantrip spells, it would say so.

Answer 2

Yes.

Spells you can cast because of your race are spells you know, and thus can be spells you prepare.

This works essentially the same way as if you had gained access to this spell through multi-classing.